Re-run setup:
start /wait setup.exe /qn INSTANCENAME=MSSQLSERVER REINSTALL=SQL_Engine REBUILDDATABASE=1 SAPWD=mypassword
Microsoft Suggestion:
Use of the Setup command to rebuild the master database has changed in this Microsoft SQL Server release. Run Setup.exe to rebuild, verify, and repair a SQL Server instance, and rebuild the system databases. This procedure is most often used to rebuild the master database for a corrupted installation of SQL Server.
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